ASMD - Alternative Splicing Mutation Database | Tool name | ASMD - Alternative Splicing Mutation Database |
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| URL | http://mco321125.meduohio.edu/~jbechtel/asmd/1.1/ |
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| Important features | It is used to check for the mutation that has been caused and the effect that happened because of the mutation. It also gives the type of mutation and the accuracy levels for that mutation. |
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| Citations | Bechtel JM, Rajesh P, Ilikchyan I, Deng Y, Mishra PK, Wang Q, Wu X, Afonin KA,
Grose WE, Wang Y, Khuder S, Fedorov A. The Alternative Splicing Mutation
Database: a hub for investigations of alternative splicing using mutational
evIDence. BMC Res Notes. 2008;1:3. Epub 2008 Feb 26. PubMed PMID: 18611286;
PubMed Central PMCID: PMC2518265.
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | 1) ASMD data can be downloaded. 2) Gene information includes Exon number, position of mutation, mutation detail and codon change. 3) Wild type and mutated sequence are given. 4) Effects of mutation along with the number of exons affected, is mentioned. |
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| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail: sequence, Exon detail: length, Exon detail direct information, Intron detail, Intron detail: sequence, Intron detail: length, Types of alternative splice events, Gene Information, CDS details |
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| Category | |
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| Input file format | gene, open reading frame (ORF) or cosmid |
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| Output file format | |
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| Limitation | |
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